Chado Phenotype Module

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Contents

New Schema

Image:new_schema.JPG

Chado Schema

Proposed changes

To be discussed

  • Do we really need references in Phenotype and Genotype tables? Or the reference in Phenstatement is good enough.
  • Whats is the SO term for Strains? We are currenlty using sequence_variant.
  • We have something called as mutant types givene by an ontology. Terms include: null, overexpression. Where can these be accomodated in the schema?

Reference Material


Object Model

Image:Phenotype_class_diagram.jpg

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