Curation stats

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Contents

Number of gene model changes(for sequencing center prediction)

  • Based on mRNA with changes in sequence calculated by md5 checksum
  • Done by a perl script

Number of genes with coordinate changes

Number of curated genes approved from geneid predictions

Number of splits into 2 or more genes

Number of merges

Number of deleted genes

1025. Query to get the number and IDs:

SELECT dx.accession
     FROM CGM_CHADO.V_DELETED_FEATURE F
INNER JOIN CGM_CHADO.CVTERM CT
     ON CT.CVTERM_ID = F.TYPE_ID
INNER JOIN cgm_chado.dbxref dx
     ON f.dbxref_id = dx.dbxref_id
WHERE ct.name     = 'gene'
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