Development - Done

From DictyWiki

Contents 1 Sept 11 2008 release 2 Feb 20 2008 release 3 December 2007 release 4 March 2007 release 5 July 2006 release

Sept 11 2008 release

1. Fix ID problem: We'll create a new 'meta-ID' for genes. Done.
   1. Announcement
   2. Features implemented(A bit technical)

1. Protein domains
2. Added EST seqences (full length- ~ 6500)
3. Textpresso
4. UniProt IDs searchable
5. GFF3 file update
6. Update of dicty2uniprot and interpro domain bulk downloads

Feb 20 2008 release

1. Integration of dicty Life analysis dataset.
2. Integration of regulatory element dataset.
3. Curation status note.

December 2007 release

1. dictyBase in Linux
2. Migrate development environment to Oracle 10g
3. Re-run Dicty genome through gene id trained with Dicty curated models

March 2007 release

1. Add inparanoid linkout: http://bugs.dictybase.org/issuetrackers/dictyBase%20Enhancements/0430
2. Add kinase.com linkout: http://bugs.dictybase.org/issuetrackers/dictyBase%20Enhancements/0560
3. Improved searching of ESTs; can now search based on an EST project clone name: http://bugs.dictybase.org/issuetrackers/dictyBase%20Enhancements/0176
4. New and improved strain searching: Strain searches now search more data fields including strain synonyms, systematic names, and strain IDs.
5. Search descriptions
6. Implemented phenotype searching
7. Implemented a genetic modification ontology and strain characteristics ontologies for more uniform curation of strains and improved searchability.
8. Implemented new version of Gbrowse.
9. Upgraded bioperl from 1.4 to 1.52
10. Numerous site-wide code changes to handle different genomes.
11. Added new configuration variables to run same application under different name (Amoebase, EntaBase)

July 2006 release

1. Pathway tools
2. Add conflicting evidence code to support for gene models
3. Update InterPro2GO mappings: http://bugs.dictybase.org/issuetrackers/dictyBase%20Enhancements/0404
4. Community annotations
5. Phenotype curation tool
6. Add RNA coding genes: http://bugs.dictybase.org/issuetrackers/dictyBase%20Enhancements/0174, http://bugs.dictybase.org/issuetrackers/dictyBase%20Enhancements/0366

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