Development To Do List
From DictyWiki
- Generate official 'data releases'? Tie with GenBank releases?
- Set up purpureum, ancatamoeba, physarum databases
- New discoideum sequences (Rob Kay, Gareth Bloomfield)
- Comparative genomics of amoebae: as a first step we could show orthologs just on each gene page?
- Changes in sequences will create new sequence version IDs. This needs development of a written plan.
- GO curation tool
- Ontology browser: provide ability to show annotations to GO and phenotypes based on ontology (ie annotations to a term and its decendents, as in AmiGO)
- Reference genome tool
- Implement ontology browser
- Add protein post-translational modifications
- Display homologs/orthologs-- somehow. One idea here: http://bugs.dictybase.org/issuetrackers/dictyBase%20Enhancements/0135
- Add protein-protein interaction data
- BioMart: Software update, bugfixes, promoters, pathways, and domains; we need to update to the new version of BioMart
- Add UTR regions
- Add expression data
- Add repeats and retrotransposable elements features (Winckler, see [1]) : not too far ahead: need to create a new feature type
- Statistics for access to wiki pages
- Done? Investigate use of pathway tools hole filler
- Add xml tags in summary paragraphs to capture extra data, see http://bugs.dictybase.org/issuetrackers/Curator%20Issues/0080
Development - Done
Back to Internal_documentation_and_standard_operating_procedures
