Previously Unpredicted Gene Models

From DictyWiki

The following genes were not predicted in V2.5 of the genome and we have found them in Nov 2007 after re-running the geneid reprediction program:

• ap1s1: sigma adaptin
• DDB_G0294589: short-chain dehydrogenase/reductase (SDR) family protein
• DDB_G0294631: unknown
• DDB_G0295675: leucine-rich repeat-containing protein (LRR)
• DDB_G0295683: LIM domain-containing protein, cofilin/tropomyosin type actin binding domain-containing protein
• DDB_G0268246: unknown
• DDB_G0295705: unknown
• DDB_G0295707: putative GATA-binding transcription factor
• DDB_G0295703: pentapeptide repeat-containing protein
• DDB_G0277337: beta-lactamase family protein
• DDB_G0295743: peptidase M3A and M3B domain-containing protein
• DDB_G0295745: unknown
• DDB_G0295747: unknown
• DDB_G0295749: deoxyribonuclease II family protein
• DDB_G0295753: mitochondrial substrate carrier family protein
• DDB_G0295755: glutamine synthetase type I
• DDB_G0295777: UbiA prenyltransferase family protein
• DDB_G0287967: unknown
• DDB_G0295779: EGF-like domain-containing protein dehydrogenase/reductase (SDR) family protein
• DDB_G0295781: putative glutamine amidotransferase
• DDB_G0295785: cyclin-related 2 family protein
• DDB_G0295787: homeodomain (HOX) containing protein
• DDB_G0295789: putative transmembrane protein
• DDB_G0295791: unknown
• DDB_G0295793: WD40 repeat-containing protein
• DDB_G0295797: EGF-like domain-containing protein
• DDB_G0295799: unknown
• DDB_G0295801: B_lectin domain-containing protein
• DDB_G0295803: heat shock protein Hsp20 domain-containing protein
• DDB_G0295811: thioredoxin fold domain-containing protein
• DDB_G0295817: unknown
• DDB_G0295819: putative membrane-anchored extracellular protein
• DDB_G0295821: putative membrane-anchored extracellular protein
• DDB_G0267850: putative transmembrane protein
• DDB_G0295757: cell surface receptor IPT/TIG domain-containing protein
• DDB_G0270962: IPT/TIG domain-containing protein
• DDB_G0295767: unknown
• DDB_G0295769: unknown
• DDB_G0295771: unknown
• DDB_G0295719: unknown
• DDB_G0284853: RING zinc finger, B box-containing protein
• DDB_G0285063: putative E3 ubiquitin-protein ligase
• DDB_G0285081: leucine-rich repeat-containing protein (LRR)
• DDB_G0285243: putative splicing endonuclease
• DDB_G0295723: IPT/TIG domain-containing protein
• DDB_G0295725: unknown
• DDB_G0295727: unknown
• DDB_G0278631: solute carrier family 35 member protein
• DDB_G0295731: ankyrin repeat-containing protein
• DDB_G0286115: phosphatidylinositol-4-phosphate 5-kinase (PIP5K) family protein
• DDB_G0295733: thioesterase superfamily protein
• DDB_G0286969: putative eukaryotic translation initiation factor 4 gamma (eIF4G)
• DDB_G0287209: transmembrane protein
• DDB_G0295735: transmembrane protein
• DDB_G0295737: PAP/25A-associated domain-containing protein
• DDB_G0295739: unknown
• DDB_G0290651: unknown
• DDB_G0295741: putative acyl-CoA N-acyltransferase
• DDB_G0280565: calponin homology (CH) domain-containing protein
• DDB_G0280895: cyclin-like F-box containing protein, START domain-containing protein
• DDB_G0295713: regulator of chromosome condensation (RCC1) domain-containing protein
• DDB_G0295715: NOL1/NOP2/Sun family protein
• DDB_G0282185: RING zinc finger, U box-containing protein
• DDB_G0282499: transcription factor E2F/dimerisation partner (TDP) family protein
• DDB_G0295841: FNIP repeat-containing protein
• DDB_G0295843: putative eukaryotic translation initiation factor 2-alpha kinase
• DDB_G0290005: myotubularin-related protein
• nat13: GCN5-related N-acetyltransferase
• nle1: putative notchless
• mybAA: myb domain-containing protein
• DDB_G0295709: ubiquitin-like Ufm1 family protein
• DDB_G0295839: unknown (04-SEPT-2008 PG)
• DDB_G0302530: unknown (12-NOV-2008 PG)
• DDB_G0302676: unknown (11-DEC-2008 PG)
• DDB_G0304886: lim domain-containing protein (20-MAY-2009 PG)
• rfk: riboflavin kinase (26-OCT-2009 PG)
• DDB_G0305367: major facilitator superfamily domain-containing protein (28-OCT-2009 PG)
• DDB_G0305372: unknown (29-OCT-2009 PG)
• DDB_G0305791_ps: pseudogene, EGF family (14-JAN-2010 PG)
• DDB_G0307284 DDB_G0307284: unknown (27-APR-2010 PG)

Missing genes

• trx
• tim44