Previously Unpredicted Gene Models
From DictyWiki
The following genes were not predicted in V2.5 of the genome and we have found them in Nov 2007 after re-running the geneid reprediction program:
- AP1S2 (DDB0252557) : sigma adaptin
- geneDDB0233382 : short-chain
- geneDDB0234129 : unknown
- geneDDB0237879 : leucine-rich repeat-containing protein (LRR)
- geneDDB0238576 : LIM domain-containing protein, cofilin/tropomyosin type actin binding domain-containing protein
- geneDDB0252551 : unknown
- geneDDB0252552 : unknown
- geneDDB0252553 : putative GATA-binding transcription factor
- geneDDB0252558 : pentapeptide repeat-containing protein
- geneDDB0252564 : beta-lactamase family protein
- geneDDB0252572 : peptidase M3A and M3B domain-containing protein
- geneDDB0252574 : unknown
- geneDDB0252575 : unknown
- geneDDB0252579 : deoxyribonuclease II family protein
- geneDDB0252589 : mitochondrial substrate carrier family protein
- geneDDB0252590 : glutamine synthetase type I
- geneDDB0252597 : UbiA prenyltransferase family protein
- geneDDB0252598 : unknown
- geneDDB0252602 : EGF-like domain-containing protein dehydrogenase/reductase (SDR) family protein
- geneDDB0252606 : putative glutamine amidotransferase
- geneDDB0252609 : cyclin-related 2 family protein
- geneDDB0252610 : homeodomain (HOX) containing protein
- geneDDB0252611 : putative transmembrane protein
- geneDDB0252612 : unknown
- geneDDB0252613 : WD40 repeat-containing protein
- geneDDB0252615 : EGF-like domain-containing protein
- geneDDB0252618 : unknown
- geneDDB0252620 : B_lectin domain-containing protein
- geneDDB0252621 : heat shock protein Hsp20 domain-containing protein
- geneDDB0252633 : thioredoxin fold domain-containing protein
- geneDDB0252682 : unknown
- geneDDB0252683 : putative membrane-anchored extracellular protein
- geneDDB0252686 : putative membrane-anchored extracellular protein
- geneDDB0252704 : putative transmembrane protein
- geneDDB0252707 : cell surface receptor IPT/TIG domain-containing protein
- geneDDB0252751 : IPT/TIG domain-containing protein
- geneDDB0252752 : unknown
- geneDDB0252753 : unknown
- geneDDB0252754 : unknown
- geneDDB0252814 : unknown
- geneDDB0252827 : RING zinc finger, B box-containing protein
- geneDDB0252828 : putative E3 ubiquitin-protein ligase
- geneDDB0252843 : leucine-rich repeat-containing protein (LRR)
- geneDDB0252844 : putative splicing endonuclease
- geneDDB0252845 : IPT/TIG domain-containing protein
- geneDDB0252846 : unknown
- geneDDB0252848 : unknown
- geneDDB0252849 : solute carrier family 35 member protein
- geneDDB0252851 : ankyrin repeat-containing protein
- geneDDB0252852 : phosphatidylinositol-4-phosphate 5-kinase (PIP5K) family protein
- geneDDB0252855 : thioesterase superfamily protein
- geneDDB0252861 : putative eukaryotic translation initiation factor 4 gamma (eIF4G)
- geneDDB0252862 : transmembrane protein
- geneDDB0252864 : transmembrane protein
- geneDDB0252871 : PAP/25A-associated domain-containing protein
- geneDDB0252876 : unknown
- geneDDB0252879 : unknown
- geneDDB0252880 : putative acyl-CoA N-acyltransferase
- geneDDB0252881 : calponin homology (CH) domain-containing protein
- geneDDB0252882 : cyclin-like F-box containing protein, START domain-containing protein
- geneDDB0252884 : regulator of chromosome condensation (RCC1) domain-containing protein
- geneDDB0252885 : NOL1/NOP2/Sun family protein
- geneDDB0252889 : RING zinc finger, U box-containing protein
- geneDDB0252890 : transcription factor E2F/dimerisation partner (TDP) family protein
- geneDDB0266335 : FNIP repeat-containing protein
- geneDDB0266336 : putative eukaryotic translation initiation factor 2-alpha kinase
- geneDDB0266510 : myotubularin-related protein
- nat13 (DDB0252842) : GCN5-related N-acetyltransferase
- nle1 (DDB0252725) : putative notchless
- mybAA (DDB0238728) : myb domain-containing protein
- ufm1 (DDB0252554) : ubiquitin-like Ufm1 family protein
[edit]
Missing genes
- trx
- tim44
