Standard Operating Procedures

From DictyWiki

The following links describe the standard protocols used by dictyBase curators to annotate genes. The contents are intended to serve as a reference for the curators, however, users are free to read these documents to see how things are done at dictyBase. For a more user-friendly guide to dictyBase, please refer to the Help pages.

Contents 1 Service Week 2 Gene Model Curation 3 Functional Annotations 4 Curation Tools 5 Useful Links for Curation

Service Week

• Service Week Tasks

Gene Model Curation

• Curation Priorities
• Gene Model Curation
• Bob's notes for Gene Model curation
• Pseudogene Annotation Guidelines
• Curation Status
• Changing a Curated Model
• Upload GenBank records

Functional Annotations

• Gene and gene product nomenclature
• Bob's notes for Gene and gene product nomenclature
  • Nomenclature issues
• Gene Ontology (GO) Curation
• Literature Curation
• Phenotype Curation
• Strain Curation
  • Markers/old_genes
• Plasmid Curation
• Special Cases

Curation Tools

Overview of all curation tools

Useful Links for Curation

• Special_Annotation_Discussions

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