Getting Started With Modware using Vmware appliance

Revision as of 09:40, 20 July 2007; E-just@northwestern.edu (Talk | contribs)
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About the VM

It is Ubuntu 6.06 LTS server edition as downloaded from VM appliance directory.
GMOD fully installed (anonymous checkout of CVS HEAD checked out July 17, 2007)
Modware tested and installed (anonymous checkout of CVS HEAD checked out July 18, 2007)
username ubuntu, password, ubuntu
Please change password on first usage

Download VMware Player. It's free.

Download VMware Fusion. VMware fusion is unfortunately not free. However, there is a Beta version that is still free. Use that.

Unzip the downloaded zip file.
Double click on the Ubuntu-6.06.1-server-i686-BASE.vmx file therein.
Login as ubuntu, password is also ubuntu.
change ubuntu password for security
sudo ./fix_ethernet.sh
cd modware_fun
open and read the scripts to see how to write code with Modware
- create_ncrna_genes.pl demonstrates how to create an insert new gene features (in this case ncRNA genes) from a data file (embedded in __DATA__ section in the script). It also demonstrates the useach of Modware::Search Count and Search methods.
- create_chromosome_1_fastas.pl demonstrates how you can use Modware to search for all features of a given type on a chromosome and write a sequence file containing sequences for each of those features.

LATER RELEASES WILL CONTAIN MORE, UNTIL THEN, email gmod-ware-users@lists.sourceforge.net with questions or contrubutions.!