Internal documentation and standard operating procedures
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Contents |
Meetings
- DictyBase_meetings : Every Second Thursday of the month at 11 AM
- Curator_meetings Every Fourth Thursday of the month at 11 AM
- Dicty meetings Yearly Dicty conference comments (SAP and general)
Software releases
dictyBase Developer Documents
- Development To Do List
- Feature/Bioperl Class Diagram
- BioMart notes
- Creating a release for dictyBase
- dictyBase clean installation instructions
- DictyBase Developer External Resources
- POD Documentation Guidelines
- Pathway Tools Notes
- Pathway tools dictyBase integration plan
- Folders descriptions
- Perl Coding Standards
- Third party code in CVS
- Viewing Sequence Data
- Wiki Policies
- mod_perl notes
- XAMPP notes
- Configuring Eclipse
- Adding new Searches
- Apollo Installation
- amoeBase Plan and Notes
- Common Error messages and how to fix them
- microRNA Gene Prediction
- Dealing with photos
- Installing a new Genome
- Maintenance log for cgm-1 for Dong
- GMOD update Notes
- Big Changes for Organism Independence
- Scheduled task list
- Endnote database update
- How to Migrate a module to Modware
- Creating a Modware Release
- Oracle techniques
- Running and Loading External Protein Alignments
- Whole Genome Alignments
- Subversion
- Ubuntu
- CVS to SVN migration
- Creating OS X developer environment
- release-2-9
- release-2-10
- Playing Oracle VM
- installing dictyBase in ubuntu
- Stats
- Importing exporting Oracle 10g production DB
- Instaling Modware on GMOD Vmware appliance
- Getting Started With Modware using Vmware appliance
- Creating Modware VM from Bare VM
- Stock center
- GO
- Phenotype
dictyBase Curator Documents
- Overhaul Curation Updates
- Searches: Intermine vs. Search box
- Biocuration Papers
- Genome Update - Notes
- Create a User Account
- Curation To Do List
- Curation Standard Operating Procedures
- Dicty Stock Center DSC SOPs
- Gene updates : Deletions, new genes, sequence conflicts
- General Important Issues
- ID management
- Issue Tracker
- SQL Queries
- Gene model curation stats (more SQL queries)
- Static pages list
- Stock Center 'to do'
- Testing development updates
- Vectors
- Bob's curated genes
- Curation stats
- List of gene models that need to be revised
Old notes
Grants etc
- dictyBase Grant 2009
- Materials for grant renewal 2009
- GO progress report 2010
- GO progress report 2011 [1]
Automated Scripts
- Deletion of unused gene products: Script ran monthly, on the 24th, 1:30 PM
- GO obsolete term report:
- GenBank records loading:
- Literature Import: Weekly, 1:00 AM Mondays
